Blend the canned chipotle peppers in adobo sauce until smooth.
In a bowl, combine the cubed chicken, smoked paprika, cumin, garlic powder, onion powder, all-purpose seasoning, 3–4 tablespoons of the blended adobo mixture, and lime juice. Toss until the chicken is evenly coated. Marinate for 15–30 minutes for the best flavor.
Heat the olive oil in a large skillet over medium-high heat. Add the chicken in a single layer and cook for 5–8 minutes, stirring occasionally, until browned and cooked through.
Mash the avocados in a bowl until creamy but slightly chunky. Add the lime juice, diced Roma tomato, red onion, and salt. Mix until combined, then adjust the seasoning to taste.
In a separate bowl, combine the diced Roma tomato, serrano pepper, red onion, cilantro, lime juice, and salt. Mix well and set aside.
In a blender, add the Greek yogurt, adobo sauce, lime juice, and garlic powder. Blend until smooth.
Spread the guacamole down the center of each tortilla, then add the chipotle chicken, chipotle sauce, black beans, pico de gallo, and shredded cheese.
Fold the sides of the tortilla inward, then fold the bottom over the filling and roll tightly to form a burrito.
Heat a nonstick skillet over medium heat. Place each burrito seam-side down and cook for 2–3 minutes until golden brown and crispy. Flip and cook for another 2–3 minutes until the other side is toasted.
Cut each burrito in half and serve warm with extra chipotle yogurt sauce.